PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000838.1_g00016.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family TCP
Protein Properties Length: 311aa    MW: 33627.4 Da    PI: 6.8525
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000838.1_g00016.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP118.96.3e-3768145278
                      TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaess 78 
                              ++k+++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++ti+WLlqqa+p+i+++tg++s +as+   a++s
  Itr_sc000838.1_g00016.1  68 PPKRSSNKDRHTKVEGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQAEPSIIAATGSGSMPASALaAAGAS 145
                              789*************************************************************88888665333333 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036343.5E-2973141IPR005333Transcription factor, TCP
PROSITE profilePS5136928.01674128IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008361Biological Processregulation of cell size
GO:1900056Biological Processnegative regulation of leaf senescence
GO:0005634Cellular Componentnucleus
GO:0000987Molecular Functioncore promoter proximal region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MDPKGSNQQE EDERLSNIPH PTSKAMMNTS NNTDENSNKR GVAEVKDFQI MVADKEEGGK  60
RQHQQLAPPK RSSNKDRHTK VEGRGRRIRM PALCAARIFQ LTRELGHKSD GETIQWLLQQ  120
AEPSIIAATG SGSMPASALA AAGASISMPM AIGMGLHNQN LDELGAQVHI GAVDSNSRAA  180
WPLIGGNLGR HHMSTPGLWP PAAAFMSSSS SSSSTSTTNL GNDTSNYQHN KGGFPGFDLP  240
FTQINPMSFT SLLSATNPQL PGLELGLSQD AHIGVLNNQA LNHIYHQQQM EQPRMQEQHQ  300
PSPKDDSQGS E
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00636PBMTransfer from Glyma.19G095300Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012067277.11e-112PREDICTED: transcription factor TCP20
SwissprotQ9LSD55e-72TCP20_ARATH; Transcription factor TCP20
TrEMBLA0A067L0581e-112A0A067L058_JATCU; Uncharacterized protein
STRINGVIT_14s0068g01690.t011e-104(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24824201
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G27010.12e-63TCP family protein